GgaEX7006927 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NNN4]
Coordinates
chr8:20777189-20778300:+
Coord C1 exon
chr8:20777189-20777295
Coord A exon
chr8:20777694-20777884
Coord C2 exon
chr8:20778167-20778300
Length
191 bp
Sequences
Splice sites
3' ss Seq
AGCTGTCTCTGTGTTGCTAGGAT
3' ss Score
6.79
5' ss Seq
GTGGTAAGG
5' ss Score
8.37
Exon sequences
Seq C1 exon
ACAAAGTGATCCAGGAGCGAAAGGAGTCCCTTAAAGATGAACGGGAGTTTGAGAAGATCAAGAAGAAGAGGCATTTGGACTTCCTGGACATTCTACTCTGTGCTAAG
Seq A exon
GATGAGACCGGAGCTGGCCTGTCTGATGAGGACCTGCGTGCTGAAGTGGACACGTTCATGTTTGAGGGGCATGACACCACAGCCAGTGGGCTCTCATGGGTCCTGTACTGCCTGGCGTCACACCCCGAGCACCAGGCACGGTGCAGGGAGGAGATCAAGGACATCCTGGGCAGTCGGGACACCATTCAGTG
Seq C2 exon
GGAAGACCTGGGGAAGATGACCTACAGCACCATGTGCATCAAGGAGAGCCTTCGCCTCTACCCACCGGTGCCTGGCGTGTCCCGGCAGCTCAGCAAGCCCATCACCTTCCATGATGGTCGCACCCTGCCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000020688-'7-9,'7-6,8-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.028 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(7.7=100)
A:
PF0006717=p450=FE(13.8=100)
C2:
PF0006717=p450=FE(9.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAAAGTGATCCAGGAGCGAA
R:
CAGGGTGCGACCATCATGGAA
Band lengths:
234-425
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]