RnoEX6022840 @ rn6
Exon Skipping
Gene
ENSRNOG00000055078 | Cyp4b1
Description
cytochrome P450, family 4, subfamily b, polypeptide 1 [Source:RGD Symbol;Acc:2480]
Coordinates
chr5:134511067-134514764:-
Coord C1 exon
chr5:134514658-134514764
Coord A exon
chr5:134513646-134513836
Coord C2 exon
chr5:134511067-134511200
Length
191 bp
Sequences
Splice sites
3' ss Seq
TTCATTGTGCCTTCTCTCAGGAT
3' ss Score
9.86
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
Exon sequences
Seq C1 exon
ATGAGGTCATCAGGCAGCGGAAGGCAGCACTGCAGGATGAGAAAGAGCGGAAAAAGATTCAGCAGCGGAGGCACCTGGACTTCCTGGACATTCTCCTGGGTGTCCGG
Seq A exon
GATGAAAGTGGGATCAAGCTGTCAGATGCAGAGCTCCGGGCTGAAGTGGACACATTCATGTTTGAAGGCCATGACACCACCACTAGTGGTATCTCTTGGTTTCTCTACTGCATGGCCCTTTACCCTGAGCACCAGCAGCTATGTAGGGAGGAGGTCCGTGGGATCCTAGGAGACCAAGACTCCTTCCAATG
Seq C2 exon
GGATGATCTGGCCAAGATGACCTACCTGACCATGTGCATGAAGGAGTGCTTCCGCCTCTACCCACCTGTACCCCAAGTATACCGCCAGCTCAACAAGCCAGTCACCTTCGTGGATGGCCGCTCTCTACCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000055078-'10-12,'10-9,12-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.111 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(7.7=100)
A:
PF0006717=p450=FE(13.8=100)
C2:
PF0006717=p450=FE(9.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTCATCAGGCAGCGGAAG
R:
CAGGTAGAGAGCGGCCATCC
Band lengths:
234-425
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]