GgaEX1002460 @ galGal3
Exon Skipping
Gene
ENSGALG00000010469 | F1NNP0_CHICK
Description
NA
Coordinates
chr8:22609833-22611357:+
Coord C1 exon
chr8:22609833-22609939
Coord A exon
chr8:22610692-22610882
Coord C2 exon
chr8:22611224-22611357
Length
191 bp
Sequences
Splice sites
3' ss Seq
TATATTCTCCTCTTTGCTAGGAT
3' ss Score
8.02
5' ss Seq
GTGGTGAGC
5' ss Score
6.64
Exon sequences
Seq C1 exon
ATAAAGTAATACAAGAAAGAAAGATATTGCTCTCCAATGACAAGGAGCTAGACAAGATCCGGAAGAAGAGACACCTGGATTTTCTGGACATTCTTCTTTGTACCAAG
Seq A exon
GATGAGAATGGAGTTGGCCTGTCTGATGAGGACCTGCGTGCTGAGGTGGACACATTCATGTTTGAGGGGCACGACACCACAGCCAGCGGGATCTCATGGCTCCTGTACTGCATGGCATTGCACCCCAAGCACCAGGCACTGTGCAGGGAGGAGATCCAGGGGATCATGGGGAACCGGGATACCATTGAGTG
Seq C2 exon
GGAGGACCTGGGGAAGATGACATACAGCACCATGTGCATCAAGGAGAGCTTGCGCCTGTTCCCACCCGTCCCTGCAGTGTCCCGAAGGCTCTCTAAACCTGTTACGTTTTCTGATGGGCGCAGCTTACCTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010469-'6-10,'6-7,8-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.022
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(7.7=100)
A:
PF0006717=p450=FE(13.9=100)
C2:
PF0006717=p450=FE(9.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACAAGAAAGAAAGATATTGCTCTCC
R:
GTAAGCTGCGCCCATCAGAAA
Band lengths:
226-417
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]