BtaEX6017977 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015647 | CYP4X1
Description
cytochrome P450, family 4, subfamily X, polypeptide 1 [Source:HGNC Symbol;Acc:HGNC:20244]
Coordinates
chr3:99669437-99675702:-
Coord C1 exon
chr3:99675596-99675702
Coord A exon
chr3:99674763-99674950
Coord C2 exon
chr3:99669437-99669570
Length
188 bp
Sequences
Splice sites
3' ss Seq
ATCTCTACTATTCTTTCTAGGCT
3' ss Score
7.75
5' ss Seq
CTGGTAAGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
ACAAGATAGTCAAGAATAGAAGGAATTCCCTCAAGGATGAGAATAAGCAGACTAACACTCAGAAGAGGAAATACCGGGACTTCCTGGATATTGTCCTTTCTGCTCAG
Seq A exon
GCTGAAAATGATAGCTTCACAGATGCAGACCTGTGGTCCGAGGTGAACACATTCATGGTGGCAGGGCATGACTCTGTATCAGCAGGCATTTCCTGGCTCCTCTACCACCTAGCTCTGTACCCTGAGCATCAGGAGAAATGCCGGGAGGAGATCAGAGCCATCCTGGGGGATGGGTCTTCCATTACCTG
Seq C2 exon
GGACCAACTGAGCGAGATGTCATACACCACAATGTGCATTAAGGAGTCACTCCGCTTGGCACCTCCAGCCGTGTCCATTTCCAGACAACTCAGCAAGCCCATTACCTTTCCAGATGGACGGTCTTTGCCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015647-'6-7,'6-6,7-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.333 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(8.0=100)
A:
PF0006717=p450=FE(14.2=100)
C2:
PF0006717=p450=FE(10.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATAGTCAAGAATAGAAGGAATTCCC
R:
CAGGCAAAGACCGTCCATCTG
Band lengths:
234-422
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]