BtaEX6017976 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015647 | CYP4X1
Description
cytochrome P450, family 4, subfamily X, polypeptide 1 [Source:HGNC Symbol;Acc:HGNC:20244]
Coordinates
chr3:99674763-99687405:-
Coord C1 exon
chr3:99687251-99687405
Coord A exon
chr3:99675596-99675702
Coord C2 exon
chr3:99674763-99674950
Length
107 bp
Sequences
Splice sites
3' ss Seq
GAATATTTATTCTACCCTAGACA
3' ss Score
5.86
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
CTCCCATGATAATTATGTAAAAGCAACAAGTGAAGGCAGCAATATCCTTATGCAACGCCTGTTCAATTACTTTTATCACTATGACCTAATTTTCAAATTAAGTCCTCTGGGCCACCGCCTGCGGGAGGTAAACAAGATATTGCATCATCATACAG
Seq A exon
ACAAGATAGTCAAGAATAGAAGGAATTCCCTCAAGGATGAGAATAAGCAGACTAACACTCAGAAGAGGAAATACCGGGACTTCCTGGATATTGTCCTTTCTGCTCAG
Seq C2 exon
GCTGAAAATGATAGCTTCACAGATGCAGACCTGTGGTCCGAGGTGAACACATTCATGGTGGCAGGGCATGACTCTGTATCAGCAGGCATTTCCTGGCTCCTCTACCACCTAGCTCTGTACCCTGAGCATCAGGAGAAATGCCGGGAGGAGATCAGAGCCATCCTGGGGGATGGGTCTTCCATTACCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015647-'5-6,'5-5,6-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.038 A=0.333 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(11.9=100)
A:
PF0006717=p450=FE(8.0=100)
C2:
PF0006717=p450=FE(14.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCAACAAGTGAAGGCAGCAA
R:
GAGCTAGGTGGTAGAGGAGCC
Band lengths:
249-356
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]