RnoEX0025998 @ rn6
Exon Skipping
Gene
ENSRNOG00000062306 | Cyp4f17
Description
cytochrome P450, family 4, subfamily f, polypeptide 17 [Source:RGD Symbol;Acc:1561655]
Coordinates
chr7:14544170-14544676:+
Coord C1 exon
chr7:14544170-14544303
Coord A exon
chr7:14544376-14544440
Coord C2 exon
chr7:14544594-14544676
Length
65 bp
Sequences
Splice sites
3' ss Seq
CTTCTTTTCTTGTCCAAAAGGAA
3' ss Score
7.17
5' ss Seq
GAGGTGTGA
5' ss Score
3.51
Exon sequences
Seq C1 exon
GGACGACCTGACCCAGCTGCCCTTCCTGACCATGTGCATCAAGGAGAGTCTGCGGCTGCACCCCCCAGTCACAGTCATCTCCCGATGCTGCACCCAAGACGTTGTGCTTCCAGACGGCCGGGTCATCCCAAAAG
Seq A exon
GAAACGACTGTATCATCAGCATCTTTGGGGTTCATCACAACCCTTCAGTCTGGCCAGACCCTGAG
Seq C2 exon
GTCTATGACCCCTTCCGCTTCGACTCAGAAAACCCACAGAAGAGGTCTCCTCTGGCTTTTATTCCCTTTTCTGCCGGGCCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000062306_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.036
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(13.5=100)
A:
PF0006717=p450=FE(4.5=100)
C2:
PF0006717=p450=FE(5.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTTCCTGACCATGTGCATC
R:
GAGGAGACCTCTTCTGTGGGT
Band lengths:
167-232
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]