MmuEX0008669 @ mm10
Exon Skipping
Gene
ENSMUSG00000091586 | Cyp4f17
Description
cytochrome P450, family 4, subfamily f, polypeptide 17 [Source:MGI Symbol;Acc:MGI:3646233]
Coordinates
chr17:32527841-32528358:+
Coord C1 exon
chr17:32527841-32527974
Coord A exon
chr17:32528047-32528111
Coord C2 exon
chr17:32528276-32528358
Length
65 bp
Sequences
Splice sites
3' ss Seq
GACTTTTTTCTTGTCCAAAGGAA
3' ss Score
9.03
5' ss Seq
GAGGTGCGA
5' ss Score
5.51
Exon sequences
Seq C1 exon
GGACGACCTGGCCCAGCTGCCCTTCCTGACCATGTGCATCAAGGAGAGTCTGCGGCTGCACCCCCCAGTTACGGTCATTTCCCGTTGCTGCACCCAAGACGTTGTGCTTCCAGATGGCCGGGTCATCCCTAAAG
Seq A exon
GAACCGACTGTGTCATCAGCATCTTCGGGGTTCATCACAACCCTGAAGTCTGGCCAGACCCTGAG
Seq C2 exon
GTCTATGACCCCTTCCGCTTCGACCCAGAAAACCCACAGAAGAGGTCTCCTCTGGCTTTTATTCCCTTTTCTGCTGGGCCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000091586_MULTIEX1-1/2=C1-2
Average complexity
C1*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.143
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(9.7=100)
A:
PF0006717=p450=FE(4.5=100)
C2:
PF0006717=p450=FE(5.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTTCCTGACCATGTGCATC
R:
GAGGAGACCTCTTCTGTGGGT
Band lengths:
167-232
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types