MmuEX0008669 @ mm9
Exon Skipping
Gene
ENSMUSG00000091586 | CT485616.2
Description
cytochrome P450, family 4, subfamily f, polypeptide 17 [Source:MGI Symbol;Acc:MGI:3646233]
Coordinates
chr17:32664786-32665303:+
Coord C1 exon
chr17:32664786-32664919
Coord A exon
chr17:32664992-32665056
Coord C2 exon
chr17:32665221-32665303
Length
65 bp
Sequences
Splice sites
3' ss Seq
GACTTTTTTCTTGTCCAAAGGAA
3' ss Score
9.03
5' ss Seq
GAGGTGCGA
5' ss Score
5.51
Exon sequences
Seq C1 exon
GGACGACCTGGCCCAGCTGCCCTTCCTGACCATGTGCATCAAGGAGAGTCTGCGGCTGCACCCCCCAGTTACGGTCATTTCCCGTTGCTGCACCCAAGACGTTGTGCTTCCAGATGGCCGGGTCATCCCTAAAG
Seq A exon
GAACCGACTGTGTCATCAGCATCTTCGGGGTTCATCACAACCCTGAAGTCTGGCCAGACCCTGAG
Seq C2 exon
GTCTATGACCCCTTCCGCTTCGACCCAGAAAACCCACAGAAGAGGTCTCCTCTGGCTTTTATTCCCTTTTCTGCTGGGCCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000091586_MULTIEX1-1/2=C1-2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.143
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(9.7=100)
A:
PF0006717=p450=FE(4.5=100)
C2:
PF0006717=p450=FE(5.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTTCCTGACCATGTGCATC
R:
GAGGAGACCTCTTCTGTGGGT
Band lengths:
167-232
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: