RnoEX0026004 @ rn6
Exon Skipping
Gene
ENSRNOG00000015751 | Cyp4f18
Description
cytochrome P450, family 4, subfamily f, polypeptide 18 [Source:RGD Symbol;Acc:1305261]
Coordinates
chr16:19501680-19506637:+
Coord C1 exon
chr16:19501680-19501878
Coord A exon
chr16:19503775-19503891
Coord C2 exon
chr16:19506493-19506637
Length
117 bp
Sequences
Splice sites
3' ss Seq
GTGACCTTCCCTTCTGCAAGAGA
3' ss Score
2.63
5' ss Seq
TAGGTGAGA
5' ss Score
6.95
Exon sequences
Seq C1 exon
GATGCCACTGCTGAGCCTGTCCTGGCTGGGCCTGGGGCACACAGCAGCCTCTCCATGGCTGTTGCTGCTGCTGGTTGGGGCCTCCTGTCTCCTGGCTTACATCCTGCCTCAGGTTTATGCTGTCTTTGAGAACTCTCGTCGCCTCCGCCGTTTTCCGCAGCCCCCCACACGAAACTGGCTCTTTGGACACCTAGGCCTG
Seq A exon
AGAGAGTGTTCCAAGCTGAAGGAAACATGTCCACAGCGTATGGCCTGAGTATCATTGTACAAGACTTTTCCCAGGGAGACACCACACAGGTCTGCTAAGCCCAGATGAGGAGACTAG
Seq C2 exon
ATCCAGAGCTCAGAGGAAGGGCTCCTGTACATCCAGAGCCTGTCGAGAACCTTCAGGGATGTTTGCTGCTGGTGGGTGGGGCCGTGGCACCCCGTTATCCGCATATTCCACCCTGCCTTCATCAAGCCCGTGATCTTGGCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015751_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=PU(3.0=21.2)
A:
NO
C2:
PF0006717=p450=FE(10.3=100)
Main Inclusion Isoform:
ENSRNOT00000021609fB3828
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCCTGTCTCCTGGCTTACA
R:
CCAAGATCACGGGCTTGATGA
Band lengths:
258-375
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]