RnoEX0026865 @ rn6
Exon Skipping
Gene
ENSRNOG00000013040 | Ddx31
Description
DEAD-box helicase 31 [Source:RGD Symbol;Acc:1304895]
Coordinates
chr3:7457910-7462959:+
Coord C1 exon
chr3:7457910-7458049
Coord A exon
chr3:7461103-7461281
Coord C2 exon
chr3:7462878-7462959
Length
179 bp
Sequences
Splice sites
3' ss Seq
TATGTCTCTGTCCTTCACAGGTT
3' ss Score
12.07
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
TACAGTGCTCCGTCTGCACCTGCAGAGTACATTCACCGCATTGGAAGGACTGCCCGGATCGGCTGTCATGGGAGCAGCCTGCTCATTTTGGCTCCTTCGGAGGCAGAGTATGTCAACTCGTTGGCTTCTCACAAAATCAA
Seq A exon
GTTGGGACCTGGAGAAAATGCTTCTGGGGGAAGGGGTGCCCTGCCCTTCCTTCTGTCTCCCCAGCCCTCCACTCCTGCACCTACCGCTCCCTGCTCTAGCAACGCCTCTCCTTCATGGGTCTGTGGATGCTCAGGGACGGGGGCTAGGCTTGAAGCTCAGGAGAGTTGACAGGTCTCAG
Seq C2 exon
TGTCTCTGAGATTAAGCTGGAAGGTATTTTGGCTGTCCTGGCAAAGGATGATTGTTTTAAAAGGAGACAAAGGGGAGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013040_MULTIEX2-2/3=1-3
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.375 C2=0.143
Domain overlap (PFAM):
C1:
PF0027126=Helicase_C=PD(27.0=42.6)
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSRNOT00000064323fB3984
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACAGTGCTCCGTCTGCA
R:
GGCTCCCCTTTGTCTCCTTTT
Band lengths:
219-398
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]