RnoEX0026864 @ rn6
Exon Skipping
Gene
ENSRNOG00000013040 | Ddx31
Description
DEAD-box helicase 31 [Source:RGD Symbol;Acc:1304895]
Coordinates
chr3:7456433-7462959:+
Coord C1 exon
chr3:7456433-7456483
Coord A exon
chr3:7457910-7458049
Coord C2 exon
chr3:7462878-7462959
Length
140 bp
Sequences
Splice sites
3' ss Seq
ATCTGCGCTGTCCTTTTCAGTAC
3' ss Score
10
5' ss Seq
CAAGTGAGT
5' ss Score
9.1
Exon sequences
Seq C1 exon
GATGTTGCATCTCGAGGCTTGGATCTCCCACAAGTCACCTGGATTGTTCAG
Seq A exon
TACAGTGCTCCGTCTGCACCTGCAGAGTACATTCACCGCATTGGAAGGACTGCCCGGATCGGCTGTCATGGGAGCAGCCTGCTCATTTTGGCTCCTTCGGAGGCAGAGTATGTCAACTCGTTGGCTTCTCACAAAATCAA
Seq C2 exon
TGTCTCTGAGATTAAGCTGGAAGGTATTTTGGCTGTCCTGGCAAAGGATGATTGTTTTAAAAGGAGACAAAGGGGAGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013040_MULTIEX2-1/3=C1-3
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.143
Domain overlap (PFAM):
C1:
PF0027126=Helicase_C=FE(21.6=100)
A:
PF0027126=Helicase_C=PD(27.0=42.6)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGTTGCATCTCGAGGCTTGG
R:
GGGCTCCCCTTTGTCTCCTTT
Band lengths:
130-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]