HsaEX6063669 @ hg19
Exon Skipping
Gene
ENSG00000125485 | DDX31
Description
DEAD (Asp-Glu-Ala-Asp) box polypeptide 31 [Source:HGNC Symbol;Acc:16715]
Coordinates
chr9:135501051-135507478:-
Coord C1 exon
chr9:135507428-135507478
Coord A exon
chr9:135505651-135505790
Coord C2 exon
chr9:135501051-135501132
Length
140 bp
Sequences
Splice sites
3' ss Seq
ATTTTTGTTACCCTTTTTAGTAC
3' ss Score
7.28
5' ss Seq
CAAGTGAGT
5' ss Score
9.1
Exon sequences
Seq C1 exon
GATGTTGCAGCTCGGGGCTTAGATCTCCCTCAAGTCACGTGGATTGTTCAG
Seq A exon
TACAACGCTCCATCTTCACCTGCAGAATACATCCACCGGATTGGAAGAACCGCCCGGATTGGCTGCCATGGGAGCAGCCTGCTCATTTTGGCTCCTTCGGAGGCAGAATATGTCAACTCGTTGGCTTCTCACAAAATCAA
Seq C2 exon
CGTTTCTGAGATTAAGATGGAAGATATTTTGTGTGTTCTGACAAGAGATGATTGTTTTAAAGGGAAACGATGGGGAGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000125485-'24-24,'24-21,25-24=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0027126=Helicase_C=FE(21.3=100)
A:
PF0027126=Helicase_C=PD(26.7=42.6)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGTTGCAGCTCGGGGC
R:
GGCTCCCCATCGTTTCCCTTT
Band lengths:
130-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)