GgaEX1019111 @ galGal4
Exon Skipping
Gene
ENSGALG00000003534 | DDX31
Description
DEAD (Asp-Glu-Ala-Asp) box polypeptide 31 [Source:HGNC Symbol;Acc:HGNC:16715]
Coordinates
chr17:6611621-6618360:-
Coord C1 exon
chr17:6618310-6618360
Coord A exon
chr17:6616421-6616560
Coord C2 exon
chr17:6611621-6611702
Length
140 bp
Sequences
Splice sites
3' ss Seq
CTCATGTTCCCTTTTTGAAGTAT
3' ss Score
5.57
5' ss Seq
TAAGTGAGT
5' ss Score
6.43
Exon sequences
Seq C1 exon
GATGTCGCAGCACGTGGACTAGACCTGCCTCAAGTCACGTGGATTGTGCAG
Seq A exon
TATAACGCTCCAGCTTCACCTGCGGAATACATCCACCGGATCGGGAGGACGGCTCGGATTGGCTGTCACGGGAACAGCCTGCTTGTCCTGGCGCCTTCGGAGGCAGAATATGTCAGCTTGCTGGCTTCTCACAAGATTAA
Seq C2 exon
TGTCTCCGAGATAAAGATGGAGAAGGTACTATCCAGCCTGATGAAAGACGATCGCTTCAGGCTGCGCAGACCAGGAAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003534_MULTIEX1-12/15=11-13
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.071
Domain overlap (PFAM):
C1:
PF0027126=Helicase_C=FE(21.3=100)
A:
PF0027126=Helicase_C=PD(26.7=42.6)
C2:
NO
Main Skipping Isoform:
ENSGALT00000005588fB6685
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGTCGCAGCACGTGGACTA
R:
CTTGCTTCCTGGTCTGCGC
Band lengths:
133-273
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]