BtaEX6046993 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000003530 | DDX31
Description
Bos taurus DEAD (Asp-Glu-Ala-Asp) box polypeptide 31 (DDX31), mRNA. [Source:RefSeq mRNA;Acc:NM_001101886]
Coordinates
chr11:102730459-102736247:-
Coord C1 exon
chr11:102736197-102736247
Coord A exon
chr11:102734549-102734688
Coord C2 exon
chr11:102730459-102730540
Length
140 bp
Sequences
Splice sites
3' ss Seq
TTTTCGTGCCCCTCTTTTAGTAC
3' ss Score
8.93
5' ss Seq
CAAGTGAGT
5' ss Score
9.1
Exon sequences
Seq C1 exon
GATATTGCAGCTCGGGGCTTGGATCTCCCTCAAGTCACATGGATTGTCCAG
Seq A exon
TACAACGCTCCGTCTTCACCTGCCGAATACATCCACCGGATTGGGAGAACGGCCCGGATTGGCTGCCATGGGAGCAGCCTGCTCGTCTTGGCTCCTTCGGAGGCAGAATATGTCAACTCGTTGGCTTCTCACAAAATCAA
Seq C2 exon
CGTTTCTGAGGTGAAGATGGAAGACATTTTGTCTGTTCTGACAAAGGATGATTGTTTTAAAGGGAGACGAGGGGGAAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003530-'22-23,'22-22,23-23=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.107
Domain overlap (PFAM):
C1:
PF0027126=Helicase_C=FE(21.3=100)
A:
PF0027126=Helicase_C=PD(26.7=42.6)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATATTGCAGCTCGGGGC
R:
CTGGCTTCCCCCTCGTCTC
Band lengths:
133-273
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]