HsaEX6063669 @ hg38
Exon Skipping
Gene
ENSG00000125485 | DDX31
Description
DEAD-box helicase 31 [Source:HGNC Symbol;Acc:HGNC:16715]
Coordinates
chr9:132618330-132642063:-
Coord C1 exon
chr9:132642004-132642063
Coord A exon
chr9:132630264-132630403
Coord C2 exon
chr9:132618330-132618441
Length
140 bp
Sequences
Splice sites
3' ss Seq
ATTTTTGTTACCCTTTTTAGTAC
3' ss Score
7.28
5' ss Seq
CAAGTGAGT
5' ss Score
9.1
Exon sequences
Seq C1 exon
GAAAGAACAGCAGTGTTTCAGGAATTTTCACATTCCAGAAGAGGCGTCCTTCTTTGCACG
Seq A exon
TACAACGCTCCATCTTCACCTGCAGAATACATCCACCGGATTGGAAGAACCGCCCGGATTGGCTGCCATGGGAGCAGCCTGCTCATTTTGGCTCCTTCGGAGGCAGAATATGTCAACTCGTTGGCTTCTCACAAAATCAA
Seq C2 exon
AAATCCCATGCTGTTGGCCCCCAGGAAATCCGAGAGCGAGCCACAGTCTTGCAGACGGTATTTGAAGATTACGTGCACTCCAGTGAGAGGAGGGTCTCCTGGGCAAAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000125485_MULTIEX2-3/8=C1-7
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.074
Domain overlap (PFAM):
C1:
PF0027126=Helicase_C=FE(51.4=100)
A:
PF0027126=Helicase_C=PD(26.7=42.6)
C2:
PF139591=DUF4217=PU(33.8=57.9)
Main Skipping Isoform:
ENST00000372153fB13571
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGCAGTGTTTCAGGAATTTTCAC
R:
CTTTCTTTGCCCAGGAGACCC
Band lengths:
166-306
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains