RnoINT0045998 @ rn6
Intron Retention
Gene
ENSRNOG00000013040 | Ddx31
Description
DEAD-box helicase 31 [Source:RGD Symbol;Acc:1304895]
Coordinates
chr3:7456433-7458049:+
Coord C1 exon
chr3:7456433-7456483
Coord A exon
chr3:7456484-7457909
Coord C2 exon
chr3:7457910-7458049
Length
1426 bp
Sequences
Splice sites
5' ss Seq
CAGGTAATC
5' ss Score
6.99
3' ss Seq
ATCTGCGCTGTCCTTTTCAGTAC
3' ss Score
10
Exon sequences
Seq C1 exon
GATGTTGCATCTCGAGGCTTGGATCTCCCACAAGTCACCTGGATTGTTCAG
Seq A exon
GTAATCTTCTAGTCACTGAGGTATGAGTATATGAGCATGAGAAAATGCACTGAATGATCAGTATTACTCTCTTGGGTGTTGCCCTGGTAACCAGGCAGCAGCCAGCTGTATCTCGACAGTTCTGACATCTTTCCTTAGCCCAGCCCCTCTGCAGCACTGCAGCAGAGCAGCCAGGACGGCATTCTCAGGAGAGGGCATGAGCTCTTCTGCTTCCAGTCTAATTCTTGTCACAAACCAAAGTTTCTGGAGTCTGAAAATAACAGGAGTTACCCAGGCCCCCGGGAGGCCTCATTGTGTCCAGAAGGAAATGGCTCAGCTGTCCTGAGAGCAATGTCCATGTACATTGACCTGCGGGGAGCAATTAAGGTCCTGACAGCATCTTACACACACCTCCTGCCTTAGACACTCTGCCGGAGGGTAAAGGTGTTAGCCCTATAGTCTAGTTGGGTTTCGTTTGTTTGGGGTTTTTGTTTAGGTTTTTTTTCATTAGTCTGCAGAATGGTATTTTTAAGCCTGTCTGTGGGGGCCAGGGGACATGTGCCCTGTTTACATGACTCATGGTTTATTCACATTTTGTGGCATTTCTTGCCTGTCTTATGCTGGAAAATCTGATCTTGATCTGCTCGTCATAAGTGATCATGTTGGGACTAGAAGTATTGTGTCTCTTTCCTGCTGGCCACAGAACCAATGGGAGATGGGAATTCAGGGCCGATTTTAGTGTGCCAGGGGCAGACTCTGCTTTGATTATGGGAAGACTCATACTGTGGATATTGACAAGTTTTAAATGACTGGCCTTTCGTATGATATCTTCACCTTGGACTGCTAATCTTTGATTTGTGTAGCAGCAGAGAGGGAGAGGGGAATGGGGGGGTCGGGTCATTTAACTTTAATAGTGGTAAGGTTACTGCCAAAGATAACAAGATGCCTGCCTGTTCTCTTGAGCGGGAGCTTGCCCTTTCCCTGAGTCAGGAACACACTCCCCATAGCACAAACCTGCACTGTCTGCTCTTAACGGTCTACGTCCCCACCAGTGAGGTGGTTGGCCTGCGTGCCCCTGGAGCCAGCAGCAGAGGTGGACTCTGCCAGCACAGTGGTTGGTGTCCTTCATTCTTGCACCTCTTGTCTGCTGTTGCTTCCTCCCAGCTGCTGTGTCTACCAAGGAAGTAGGCCAAGGTCATGTGGTCATCTGGAGAAATTTACCCACCTGCTTACACTGTGCTCTGCATAGTCACTTCAGTGAAAGGTCACAAACTGGAAAAGGGAGAACCGTGTTCCAGTGAAGCCAACAGCCTCAGCTTGAATAATTCCAGATTTCCAATTGTGCTAGAGTAGCCGTAGCCTGGTGCCTGCTGCAGGTGAGGGGTGCTCCTCCTATTAGTGTCAGCCCTTGATGTCTGAACCCCTTCATCTGCGCTGTCCTTTTCAG
Seq C2 exon
TACAGTGCTCCGTCTGCACCTGCAGAGTACATTCACCGCATTGGAAGGACTGCCCGGATCGGCTGTCATGGGAGCAGCCTGCTCATTTTGGCTCCTTCGGAGGCAGAGTATGTCAACTCGTTGGCTTCTCACAAAATCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013040:ENSRNOT00000064323:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0027126=Helicase_C=FE(21.6=100)
A:
NA
C2:
PF0027126=Helicase_C=PD(27.0=42.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGTTGCATCTCGAGGCTTGG
R:
TTGATTTTGTGAGAAGCCAACGA
Band lengths:
190-1616
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]