GgaINT0125443 @ galGal4
Intron Retention
Gene
ENSGALG00000003534 | DDX31
Description
DEAD (Asp-Glu-Ala-Asp) box polypeptide 31 [Source:HGNC Symbol;Acc:HGNC:16715]
Coordinates
chr17:6616421-6618360:-
Coord C1 exon
chr17:6618310-6618360
Coord A exon
chr17:6616561-6618309
Coord C2 exon
chr17:6616421-6616560
Length
1749 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
3' ss Seq
CTCATGTTCCCTTTTTGAAGTAT
3' ss Score
5.57
Exon sequences
Seq C1 exon
GATGTCGCAGCACGTGGACTAGACCTGCCTCAAGTCACGTGGATTGTGCAG
Seq A exon
GTAGGTTCGCTGTGTGTGTATGTGTGTGCATGTATTAAATGCAGTCCTGCTTGGATGAACTGCCTTTCCAGTCTGGACCCTCTTTCTGCAGTTGGCTTGTCTTTGTGCTGATGCCTCAGGTGTAGGAGATGCATGTATTCCTGACTGCATCTGTGCAGTTATCTGAATGCTTCAGGCTGGTCTTTGCTGGACTGGGACTGGGGCTGGGTTAGCTGTAAGCATTCAGCTTTCAGTAGAACTGCATAGTTCAGATTTCTCCTTTAAAACAAACAAAAGCCCACACCAGCACTGCATTGCTGTTGACAGAAATACTGTCTTTAAAAAAAAAACAACTGAAACTAAGAGAGATGGATTGAACCTTAAAAATAGCAGCCTGTCACTTCAAAGTGGAATCTGGGGGCGTGAAGCAGATTTCATTTTTGTAAAAGATTGATAATTAAAAGGAAGGTTAGTTGAATTGGGGAAAACTGATTTAGAGATTCTCATATATCAAGTGACACATGGGTAAAAAGAACAGGGCACAAAGCATTGGTGAAACAACCTTTTAATTTCTACCTCATCCCCTCAGGTAACAAATTTGATTTTAATTTAGTGTTTTTAAAAATGAAAGATTTTGTGGCAGCTAGCTGGTCAGAGAAGGCTGGGGAAGTAAAGTCTTTAATTCCCAGATCTGTATATTAATAAAATTTACCAAAGATATAGTTGCCAGTGCTAGAACGCAGTGCAAATTACCTCAAGCCCTAGGAGACTTCTGTGTGTCCAGAAGGCGAAATCTCAGCTGTCCTGAGAGCTGTGTCCAAGAGCAAGGACCTGCAGGGAGCAATTAGATTGCTCACAGCATCTTACTCACACCTCTAGCCAGTAGAAACTTTGCCAGAGGGCACAGGTATAAACACTAGAGTGGGCTTTGGTTGTTGGTTTTTTTCCAGTTAAACTGCTGAGGGCTCGTTTCTAAGCAGTATCTCTATGCATGTTCATTTTTCTAGGAAAGGAGGGGGGAAGGAATGGGGGGAGGCTAAAGGGAGGGAAATATGTCACCCTTTATCAGATCTTGCAAATAGCTGGGCATTTTCTCAGTCAAATAAATGAGAGGCACTGCTATACTGGAGTTGGGTGGGGGCCTTTAAGCAACATCTCAGTTCAGTCTCACAGTCATAGATGGAAAGACAACTGCTACCTGTATCATGTGCTGCCCAAAGGACTTAATATCACGTCTCTCTTAGGTTTTCTCTATCCAATAACTACCTATGATTTGCTTTAATCACAACAAAAACACAGCCAAATTTAGATTTGCCATATTTAATTGCATGGCTTTTCTCCTAAATGCGGCGCAGGTGGCATCCCGCTCTGTATGGGTACTGCTGGGCTTTGGTTGGTTGGAGGATTTAGTGAGAATTTTTTTTTTTTGAGAGGAAGAAGCAAACAGATTCCTGACGTGCCTGTATAGAAATAAAATGTAAAAGGCAAAGAGAGACACCGAGATGGGGAAAACTGTCCTATTATCTGAAAGTTGGCCAATGTGTCACATTCACATGTCAAGAAACTGCTGTGGCTGAGGGGGTTGAGTGATGGTTACAGCGATGAGTCCGATGGGCTCTTGATAAACAGACTGATTCCGAGGGAGGTACAGCAGGTGGGTTTTGCTGAGATCCCCTTTGTTTCAGACGAGCAGACTGAGTGTCTCGTTTATAATTAACATGCTGTGTTCTGTTAATTCCTCCCTTCCCTTCTCATGTTCCCTTTTTGAAG
Seq C2 exon
TATAACGCTCCAGCTTCACCTGCGGAATACATCCACCGGATCGGGAGGACGGCTCGGATTGGCTGTCACGGGAACAGCCTGCTTGTCCTGGCGCCTTCGGAGGCAGAATATGTCAGCTTGCTGGCTTCTCACAAGATTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003534:ENSGALT00000005588:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0027126=Helicase_C=FE(21.3=100)
A:
NA
C2:
PF0027126=Helicase_C=PD(26.7=42.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGTCGCAGCACGTGGACTA
R:
TAATCTTGTGAGAAGCCAGCAAGC
Band lengths:
190-1939
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]