RnoEX0027106 @ rn6
Exon Skipping
Gene
ENSRNOG00000010526 | Dennd1a
Description
DENN domain containing 1A [Source:RGD Symbol;Acc:1307927]
Coordinates
chr3:22275881-22292002:-
Coord C1 exon
chr3:22291949-22292002
Coord A exon
chr3:22291279-22291481
Coord C2 exon
chr3:22275881-22275991
Length
203 bp
Sequences
Splice sites
3' ss Seq
CTTCTGTGTTTGTGTCGCAGGAA
3' ss Score
10.61
5' ss Seq
GATGTAAGT
5' ss Score
9.11
Exon sequences
Seq C1 exon
CATTCTTACTTCACTGTGCCTGATAGCAGAGAGCTTCCCAGCATACCTGAGAAT
Seq A exon
GAAACCTGTACTAAGTGAAGTAAGAGGATACCTTCTAAGGGCTAAGAAGCAGCGAACTAAAGTGGCAGATCTGTAGTTTCATGTTTGCCCTCTGAAGAAGCTGAGTGACATGTCTACCCTAGTATACTATACTTTACTGTGATTATAAACTGTAAAATGTAGAAGGAAGTCTAAAGCTGCCACCAGGAGGCACGTGGTGAGAT
Seq C2 exon
AGAAATCTGACAGAATATTTTGTGGCTGTGGATGTGAACAACATGTTGCATCTGTACGCCAGCATGCTGTATGAGCGCCGGATCCTCATCATCTGCAGCAAGCTGAGTACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010526_MULTIEX3-2/6=1-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.024 A=0.200 C2=0.000
Domain overlap (PFAM):
C1:
PF0214116=DENN=FE(11.5=100)
A:
PF0214116=DENN=PD(3.7=50.0)
C2:
PF0214116=DENN=FE(19.8=100)
Main Inclusion Isoform:
ENSRNOT00000091747fB4029
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATTCTTACTTCACTGTGCCTGA
R:
GGTACTCAGCTTGCTGCAGAT
Band lengths:
165-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]