RnoEX0027107 @ rn6
Exon Skipping
Gene
ENSRNOG00000010526 | Dennd1a
Description
DENN domain containing 1A [Source:RGD Symbol;Acc:1307927]
Coordinates
chr3:22198808-22292002:-
Coord C1 exon
chr3:22291949-22292002
Coord A exon
chr3:22275881-22275991
Coord C2 exon
chr3:22198808-22198933
Length
111 bp
Sequences
Splice sites
3' ss Seq
TGCTTTCTTCTTTTTCCTAGAGA
3' ss Score
8.55
5' ss Seq
ACCGTGAGT
5' ss Score
9.4
Exon sequences
Seq C1 exon
CATTCTTACTTCACTGTGCCTGATAGCAGAGAGCTTCCCAGCATACCTGAGAAT
Seq A exon
AGAAATCTGACAGAATATTTTGTGGCTGTGGATGTGAACAACATGTTGCATCTGTACGCCAGCATGCTGTATGAGCGCCGGATCCTCATCATCTGCAGCAAGCTGAGTACC
Seq C2 exon
ATCTCCTCCCTGAAGAACAGGCTGAAGAAGGTCTCCACAACCACAGGCGATGGGGTGGCCAGAGCCTTCCTCAAGGCCCAGGCTGCTTTCTTTGGCAGCTACCGGAATGCACTGAAAATTGAGCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010526_MULTIEX3-3/6=1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.024 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0214116=DENN=FE(11.5=100)
A:
PF0214116=DENN=FE(19.8=100)
C2:
PF0345514=dDENN=PU(39.7=64.3)
Main Skipping Isoform:
ENSRNOT00000091747fB4029
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATTCTTACTTCACTGTGCCTGA
R:
GCTCAATTTTCAGTGCATTCCGG
Band lengths:
178-289
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]