GgaEX0001243 @ galGal3
Exon Skipping
Gene
ENSGALG00000001157 | DENND1A
Description
NA
Coordinates
chr17:9825728-9837320:-
Coord C1 exon
chr17:9837267-9837320
Coord A exon
chr17:9830728-9830838
Coord C2 exon
chr17:9825728-9825828
Length
111 bp
Sequences
Splice sites
3' ss Seq
TATTTTATCTCTCTTCCTAGAGA
3' ss Score
9.23
5' ss Seq
ACTGTAAGT
5' ss Score
8.59
Exon sequences
Seq C1 exon
CACTCTTACTTTACTGTGCCTGACATCAGAGAGCTTCCTAGTATACCTGAAAAT
Seq A exon
AGAAATCTGACAGAGTATTTTGTAGCAGTTGATGTCAACAACATGCTGCATCTCTATGCCAGTATGCTGTATGAACGCCGCATCCTCATTTGTTGTAGTAAACTCAGCACT
Seq C2 exon
TTAACTGCTTGCATTCATGGATCTGCAGCTATGCTCTACCCAATGTTCTGGCAGCACGTTTACATTCCTGTTCTGCCCCCACATCTCTTGGACTACTGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001157_CASSETTE4
Average complexity
S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0214116=DENN=FE(9.3=100)
A:
PF0214116=DENN=FE(19.8=100)
C2:
PF0214116=DENN=FE(18.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACTCTTACTTTACTGTGCCTGACA
R:
CAACAGTAGTCCAAGAGATGTGGG
Band lengths:
155-266
Functional annotations
There are 0 annotated functions for this event