HsaEX6062943 @ hg38
Exon Skipping
Gene
ENSG00000119522 | DENND1A
Description
DENN domain containing 1A [Source:HGNC Symbol;Acc:HGNC:29324]
Coordinates
chr9:123630376-123667079:-
Coord C1 exon
chr9:123667026-123667079
Coord A exon
chr9:123652013-123652121
Coord C2 exon
chr9:123630376-123630476
Length
109 bp
Sequences
Splice sites
3' ss Seq
CCTTCTTCTTTCTCCTAGAGAAA
3' ss Score
0.05
5' ss Seq
ACTGTGAGT
5' ss Score
7.94
Exon sequences
Seq C1 exon
CATTCTTATTTTACTGTGCCTGATACCAGAGAACTTCCCAGCATACCTGAGAAT
Seq A exon
AAATCTGACAGAATATTTTGTGGCTGTGGATGTTAACAACATGTTGCATCTGTACGCCAGTATGCTGTACGAACGCCGGATACTCATCATTTGCAGCAAACTCAGCACT
Seq C2 exon
CTGACTGCCTGCATCCACGGGTCTGCGGCGATGCTCTACCCCATGTACTGGCAGCACGTGTACATCCCCGTGCTGCCGCCGCATCTGCTGGACTACTGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000119522_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0214116=DENN=FE(11.2=100)
A:
PF0214116=DENN=FE(19.8=100)
C2:
PF0214116=DENN=FE(18.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTCTTATTTTACTGTGCCTGATACC
R:
CAGCAGTAGTCCAGCAGATGC
Band lengths:
154-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains