DreEX0003546 @ danRer10
Exon Skipping
Gene
ENSDARG00000014592 | DENND1A
Description
DENN/MADD domain containing 1A [Source:HGNC Symbol;Acc:HGNC:29324]
Coordinates
chr21:8355400-8361616:+
Coord C1 exon
chr21:8355400-8355453
Coord A exon
chr21:8356983-8357093
Coord C2 exon
chr21:8361515-8361616
Length
111 bp
Sequences
Splice sites
3' ss Seq
TTCCCTGGGTTATTTTTCAGAGA
3' ss Score
8.07
5' ss Seq
ACTGTGAGC
5' ss Score
4.2
Exon sequences
Seq C1 exon
CATTTGTTTTTCACAGTGCCTGATCCAAGAGAATTACCCAGTATACCTGAAAAT
Seq A exon
AGAAATCTGACAGAGTATTTCGTAGCAGTGGATGTGAATAACATGCTACATCTGTACGCTAGCATGCTGTACGAAAGACGAATCCTCATCAGCTGCAGCAAACTGAGCACT
Seq C2 exon
GAGGAGCCAATCACGTTCAGTGAGGAAACCTTCATCACACACCGGTCCAGCACAATGAGACAGTTTCTGCAGAACGCTATCCAGCTACAGTTCTTCAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000014592_MULTIEX1-7/18=6-12
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0214116=DENN=FE(9.4=100)
A:
PF0214116=DENN=FE(19.9=100)
C2:
PF0345514=dDENN=FE(49.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTGTTTTTCACAGTGCCTGATCC
R:
CTGTTTGAAGAACTGTAGCTGGA
Band lengths:
154-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]