GgaEX1019265 @ galGal3
Exon Skipping
Gene
ENSGALG00000002246 | DENND1B
Description
NA
Coordinates
chr8:2410317-2425538:+
Coord C1 exon
chr8:2410317-2410370
Coord A exon
chr8:2412307-2412417
Coord C2 exon
chr8:2425438-2425538
Length
111 bp
Sequences
Splice sites
3' ss Seq
CATCTTATTTATTTAAACAGAGA
3' ss Score
6.53
5' ss Seq
ACTGTGAGT
5' ss Score
7.94
Exon sequences
Seq C1 exon
CACTTGTATTTCATTACTCCTGATATAACTGGATTGCCAACAATCCCTGAAAGT
Seq A exon
AGAAACCTCACTGAGTATGTTGTTGCTGTGGATGTGAACAACATGCTGCAACTTTATGCCAGTATGTTGCATGAGAGAAGAATCATTATTACCTCGAGCAAACTAAGCACT
Seq C2 exon
TTAACTGCTTGTGTTCATGCATCAGCTGCGTTATTGTATCCCATGTATTGGCAGCACATTTACATCCCAGTGCTTCCTCCGCATCTCCTGGACTACTGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002246-'7-9,'7-8,8-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0214116=DENN=FE(9.4=100)
A:
PF0214116=DENN=FE(19.9=100)
C2:
PF0214116=DENN=FE(18.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTCCTGATATAACTGGATTGCCA
R:
AGCAGTAGTCCAGGAGATGCG
Band lengths:
139-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]