DreEX0026414 @ danRer10
Exon Skipping
Gene
ENSDARG00000101868 | dennd1b
Description
DENN/MADD domain containing 1B [Source:ZFIN;Acc:ZDB-GENE-060503-16]
Coordinates
chr22:23362971-23377199:+
Coord C1 exon
chr22:23362971-23363051
Coord A exon
chr22:23371153-23371263
Coord C2 exon
chr22:23377099-23377199
Length
111 bp
Sequences
Splice sites
3' ss Seq
ATTATGTTTTTTCCCCCTAGAGA
3' ss Score
10.13
5' ss Seq
ACTGTGAGT
5' ss Score
7.94
Exon sequences
Seq C1 exon
GAAGATGACTTGAATGACATGCTGGAAACACTGCACAACCACCCCGTGCCAAAGCCGAATACGCCAGTAAATCTGAGTGTG
Seq A exon
AGAAATTTAACCGAGTACTTCGTAGCAGTGGATGTGAACAACATGTTGCACCTTTACGCCAGCATGCTGCATGAGCGACGCATCATCATTACCTCAAGCAAGCTTAGCACT
Seq C2 exon
TTAACTGCATGCGTGCATGGGTCCACCGCCATGCTCTACCCTATGCACTGGCAGCACATCTTCATCCCTGTACTTCCTCCTCACCTGCTGGATTACTGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000101868_MULTIEX2-3/3=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.222 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0214116=DENN=FE(14.4=100)
A:
PF0214116=DENN=FE(19.9=100)
C2:
PF0214116=DENN=FE(18.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATGACTTGAATGACATGCTGGA
R:
GCAGTAATCCAGCAGGTGAGG
Band lengths:
178-289
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]