BtaEX0001147 @ bosTau6
Exon Skipping
Description
NA
Coordinates
chr16:78504041-78527089:-
Coord C1 exon
chr16:78527036-78527089
Coord A exon
chr16:78523368-78523478
Coord C2 exon
chr16:78504041-78504141
Length
111 bp
Sequences
Splice sites
3' ss Seq
GGTTGTCTTTGCCCATGCAGAGG
3' ss Score
7.14
5' ss Seq
ACCGTGAGT
5' ss Score
9.4
Exon sequences
Seq C1 exon
CATTCCTGCTTCATTGCCCCTGATGTAACTGGACTGCCAACCATCCCCGAGAAT
Seq A exon
AGGAACCTCACGGAGTACTTCGTGGCCGTGGACGTGAACAACATGCTGCAGCTCTTCGCCAGCATGCTGCACGAGAGGCGCATCATCGTCACGTCCTGGAAGCTCAGCACC
Seq C2 exon
TTAACTGCCTGTCTGCACGGCTCGGTCGCCCTGCTGTACCCCATGTACTGGCAACACATATACATCCCGGTGCTCCCCCCGCACCTGCTGGACTACTGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000037661-'11-21,'11-16,12-21
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0214116=DENN=FE(9.4=100)
A:
PF0214116=DENN=FE(19.9=100)
C2:
PF0214116=DENN=FE(18.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTCCTGCTTCATTGCCCCTG
R:
CAGCAGTAGTCCAGCAGGTG
Band lengths:
154-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development