RnoEX0027124 @ rn6
Exon Skipping
Gene
ENSRNOG00000011063 | Dennd1b
Description
DENN domain containing 1B [Source:RGD Symbol;Acc:1308441]
Coordinates
chr13:56121585-56151534:+
Coord C1 exon
chr13:56121585-56121638
Coord A exon
chr13:56129386-56129496
Coord C2 exon
chr13:56151434-56151534
Length
111 bp
Sequences
Splice sites
3' ss Seq
CAGTCCTTTCCTTTGTGCAGAGA
3' ss Score
6.17
5' ss Seq
ACTGTGAGT
5' ss Score
7.94
Exon sequences
Seq C1 exon
CACTCCTGTTTCATCACACCGGACATAACTGGACTTCCAACCATCCCGGAGAGT
Seq A exon
AGAAACCTGACGGAGTACTTCGTAGCTGTGGATGTGAACAACATGCTGCGGTTGTACGCCAGCATGCTGCACGAGAGGCGCATCATTATTACCTCGAGCAAATTAAGCACT
Seq C2 exon
TTAACTGCCTGTCTCCATGGATCGGCCGCTCTGCTCTACCCGATGTACTGGCAACACATATATATCCCTGTGCTTCCTCCACACCTGCTGGACTACTGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011063_MULTIEX1-9/10=8-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0214116=DENN=FE(14.3=100)
A:
PF0214116=DENN=FE(17.9=100)
C2:
PF0214116=DENN=FE(16.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTCCTGTTTCATCACACCGG
R:
CAGCAGTAGTCCAGCAGGTGT
Band lengths:
154-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]