RnoEX0027120 @ rn6
Exon Skipping
Gene
ENSRNOG00000011063 | Dennd1b
Description
DENN domain containing 1B [Source:RGD Symbol;Acc:1308441]
Coordinates
chr13:56098742-56151534:+
Coord C1 exon
chr13:56098742-56098861
Coord A exon
chr13:56114438-56114507
Coord C2 exon
chr13:56151434-56151534
Length
70 bp
Sequences
Splice sites
3' ss Seq
CATTTAAATTCTTCTTACAGTTA
3' ss Score
8.2
5' ss Seq
CTGGTAAGC
5' ss Score
8.69
Exon sequences
Seq C1 exon
GGTGTCTCAGAATCAAGTTGGACAGCACTTTACCTTCGTCCTGACAGACATGGAAAGTAAGCAACGATTTGGGTTCTGCAGGCTCACATCTGGAGGCAGAGTTTGTTTGTGTATTCTTAG
Seq A exon
TTACTTGCCATGGTTTGAAGTGTATTATAAACTTCTAAATACTCTGGCAGATTACTTGGCCAAGGAACTG
Seq C2 exon
TTAACTGCCTGTCTCCATGGATCGGCCGCTCTGCTCTACCCGATGTACTGGCAACACATATATATCCCTGTGCTTCCTCCACACCTGCTGGACTACTGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011063_MULTIEX1-5/10=4-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0345613=uDENN=PD(63.8=73.2),PF0214116=DENN=PU(4.0=19.5)
A:
PF0214116=DENN=FE(11.4=100)
C2:
PF0214116=DENN=FE(16.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTCGTCCTGACAGACATGG
R:
TGTGGAGGAAGCACAGGGATA
Band lengths:
171-241
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]