BtaEX0001152 @ bosTau6
Exon Skipping
Description
NA
Coordinates
chr16:78534139-78552437:-
Coord C1 exon
chr16:78552318-78552437
Coord A exon
chr16:78541791-78541860
Coord C2 exon
chr16:78534139-78534219
Length
70 bp
Sequences
Splice sites
3' ss Seq
CTATTATTATTATTTTACAGTTA
3' ss Score
8.68
5' ss Seq
CTGGTAAGC
5' ss Score
8.69
Exon sequences
Seq C1 exon
AGCGTCTCGGAATCAGGTTGGACAGCACTTTGCCTTCGTGCTGACGGACATTGAGAGTAAACAGAGGTTTGGGTTCTGCCGACTCACCGCAGGAGGCAAGATCTGCTTATGCATCCTGAG
Seq A exon
TTACCTGCCATGGTTTGAAGTATATTACAAGCTTCTGAATACTCTGGCAGATTACTTGACTAAGGAACTG
Seq C2 exon
GAAGACGATTTGAATGAAACTCTGAGATCTCTCTATAACCATCCAGTACCGAAGGCAAACACCCCTGTCAACTTGAGTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000037661_MULTIEX1-3/3=2-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0345613=uDENN=PD(63.8=73.2),PF0214116=DENN=PU(4.4=19.5)
A:
PF0214116=DENN=FE(12.7=100)
C2:
PF0214116=DENN=FE(14.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGGTTGGACAGCACTTTGC
R:
TTGACAGGGGTGTTTGCCTTC
Band lengths:
179-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development