GgaEX0002796 @ galGal4
Exon Skipping
Gene
ENSGALG00000002246 | DENND1B
Description
DENN/MADD domain containing 1B [Source:HGNC Symbol;Acc:HGNC:28404]
Coordinates
chr8:2377611-2404649:+
Coord C1 exon
chr8:2377611-2377730
Coord A exon
chr8:2383321-2383390
Coord C2 exon
chr8:2404549-2404649
Length
70 bp
Sequences
Splice sites
3' ss Seq
CTTTTTTTCCTCTCTTTTAGTTA
3' ss Score
11.66
5' ss Seq
CAGGTAATT
5' ss Score
8.55
Exon sequences
Seq C1 exon
GGTGTCCCAAAACCAAGTAGGACAGCATTTTACTTTTGTGCTCACCGACATTGAAAGTAAGCAACGGTTTGGATTTTGCCGTTTGACATCAGGAGGCAAAGTCTGCCTCTGTATTCTGAG
Seq A exon
TTATTTACCCTGGTTTGAAGTATACTATAAGCTTTTAAATACTCTGGCAGATTATTTGGCTAAAGAGCAG
Seq C2 exon
TTAACTGCTTGTGTTCATGCATCAGCTGCGTTATTGTATCCCATGTATTGGCAGCACATTTACATCCCAGTGCTTCCTCCGCATCTCCTGGACTACTGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002246_MULTIEX1-2/6=1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0345613=uDENN=PD(63.8=73.2),PF0214116=DENN=PU(4.0=19.5)
A:
PF0214116=DENN=FE(11.4=100)
C2:
PF0214116=DENN=FE(16.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGCTCACCGACATTGAAAGT
R:
CAGTAGTCCAGGAGATGCGGA
Band lengths:
182-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]