DreEX0026406 @ danRer10
Exon Skipping
Gene
ENSDARG00000101868 | dennd1b
Description
DENN/MADD domain containing 1B [Source:ZFIN;Acc:ZDB-GENE-060503-16]
Coordinates
chr22:23345639-23363051:+
Coord C1 exon
chr22:23345639-23345758
Coord A exon
chr22:23355445-23355514
Coord C2 exon
chr22:23362971-23363051
Length
70 bp
Sequences
Splice sites
3' ss Seq
TTTTGTTCTTTTTTTAACAGCTA
3' ss Score
10.06
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
AGTTTCTCCGACTCAGGTGGGCCAGAACTTCACGTTTGTGCTCACAGACATTGAAAGCAAGCAGAGGTTTGGGTTCTGTCGGCTGACGTCCGGCTGCAAGCTCTGCATCTGCTTGCTCAG
Seq A exon
CTATCTCCCATGGTTTGAGATTTATTATAAGCTGCTAAATACCCTTGCAGACTACTTATCAAAACACCAG
Seq C2 exon
GAAGATGACTTGAATGACATGCTGGAAACACTGCACAACCACCCCGTGCCAAAGCCGAATACGCCAGTAAATCTGAGTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000101868-'6-8,'6-7,7-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.222
Domain overlap (PFAM):
C1:
PF0345613=uDENN=PD(48.4=73.2),PF0214116=DENN=PU(4.4=19.5)
A:
PF0214116=DENN=FE(12.7=100)
C2:
PF0214116=DENN=FE(14.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTTTCTCCGACTCAGGTGGG
R:
GTATTCGGCTTTGGCACGGG
Band lengths:
182-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]