GgaEX0002796 @ galGal3
Exon Skipping
Gene
ENSGALG00000002246 | DENND1B
Description
NA
Coordinates
chr8:2398500-2405932:+
Coord C1 exon
chr8:2398500-2398619
Coord A exon
chr8:2404210-2404279
Coord C2 exon
chr8:2405852-2405932
Length
70 bp
Sequences
Splice sites
3' ss Seq
CTTTTTTTCCTCTCTTTTAGTTA
3' ss Score
11.66
5' ss Seq
CAGGTAATT
5' ss Score
8.55
Exon sequences
Seq C1 exon
GGTGTCCCAAAACCAAGTAGGACAGCATTTTACTTTTGTGCTCACCGACATTGAAAGTAAGCAACGGTTTGGATTTTGCCGTTTGACATCAGGAGGCAAAGTCTGCCTCTGTATTCTGAG
Seq A exon
TTATTTACCCTGGTTTGAAGTATACTATAAGCTTTTAAATACTCTGGCAGATTATTTGGCTAAAGAGCAG
Seq C2 exon
GAAAATGACTCAAATGATTTGTTAAAGTCATTGTATAGCCACCCTGTGCCAAAGGCAAATGCTTTAGTCAGTTTAAGTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002246-'3-5,'3-4,4-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0214116=DENN=PU(4.4=33.3)
A:
PF0214116=DENN=FE(12.7=100)
C2:
PF0214116=DENN=FE(14.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGTCCCAAAACCAAGTAGGA
R:
GCACAGGGTGGCTATACAATGA
Band lengths:
169-239
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]