RnoEX0027118 @ rn6
Exon Skipping
Gene
ENSRNOG00000011063 | Dennd1b
Description
DENN domain containing 1B [Source:RGD Symbol;Acc:1308441]
Coordinates
chr13:56077085-56114507:+
Coord C1 exon
chr13:56077085-56077128
Coord A exon
chr13:56096834-56096883
Coord C2 exon
chr13:56114438-56114507
Length
50 bp
Sequences
Splice sites
3' ss Seq
TTTTGCATTTGCATTTTTAGGAA
3' ss Score
11.09
5' ss Seq
AAGGTATAG
5' ss Score
7.98
Exon sequences
Seq C1 exon
ATCCTGTGGTATTGTGGAAATTCCCAGAGGACTTTGGAGATCAG
Seq A exon
GAAGTTCTGCAGAGTGTGCCCAGGTTCTGTTTTCCCTTCGATGTGGAAAG
Seq C2 exon
TTACTTGCCATGGTTTGAAGTGTATTATAAACTTCTAAATACTCTGGCAGATTACTTGGCCAAGGAACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011063_MULTIEX1-3/10=2-5
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0345613=uDENN=PU(22.6=93.3)
A:
PF0345613=uDENN=PU(34.0=94.1)
C2:
PF0214116=DENN=FE(11.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTGTGGTATTGTGGAAATTCCC
R:
CCTTGGCCAAGTAATCTGCCA
Band lengths:
108-158
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]