HsaEX0019106 @ hg38
Exon Skipping
Gene
ENSG00000213047 | DENND1B
Description
DENN domain containing 1B [Source:HGNC Symbol;Acc:HGNC:28404]
Coordinates
chr1:197672037-197715074:-
Coord C1 exon
chr1:197715031-197715074
Coord A exon
chr1:197674120-197674169
Coord C2 exon
chr1:197672037-197672156
Length
50 bp
Sequences
Splice sites
3' ss Seq
TTTGAAATTTCCATTTGTAGGAA
3' ss Score
8.55
5' ss Seq
AAGGTACAG
5' ss Score
8.04
Exon sequences
Seq C1 exon
ATCCTGTGGTATTGTGGAAATTCCCAGAGGACTTTGGAGACCAG
Seq A exon
GAAATACTACAGAGTGTGCCAAAGTTCTGTTTTCCCTTTGACGTTGAAAG
Seq C2 exon
GGTGTCTCAGAATCAAGTTGGACAGCACTTTACCTTTGTACTGACAGACATTGAAAGTAAACAGAGATTTGGATTCTGCAGACTGACGTCAGGAGGCACAATTTGTTTATGCATCCTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000213047_MULTIEX1-3/15=2-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0345613=uDENN=PU(22.6=93.3)
A:
PF0345613=uDENN=FE(25.8=100)
C2:
PF0345613=uDENN=PD(48.4=73.2),PF0214116=DENN=PU(3.9=17.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGGAAATTCCCAGAGGACT
R:
AATTGTGCCTCCTGACGTCAG
Band lengths:
135-185
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development