MmuEX0014230 @ mm9
Exon Skipping
Gene
ENSMUSG00000056268 | Dennd1b
Description
DENN/MADD domain containing 1B [Source:MGI Symbol;Acc:MGI:2447812]
Coordinates
chr1:140919682-140949992:+
Coord C1 exon
chr1:140919682-140919725
Coord A exon
chr1:140936577-140936626
Coord C2 exon
chr1:140949923-140949992
Length
50 bp
Sequences
Splice sites
3' ss Seq
TTTTGAATTTGCATTTTTAGGAA
3' ss Score
10.02
5' ss Seq
AAGGTATAG
5' ss Score
7.98
Exon sequences
Seq C1 exon
ATCCTGAGGTATTGTGGAAATTCCCAGAGGACTTTGGAGACCAG
Seq A exon
GAAGTTCTGCAGAGCGTGCCCAAGTTCTGTTTTCCCTTCGATGTGGAAAG
Seq C2 exon
TTACTTGCCATGGTTTGAAGTATATTATAAACTTCTAAATACTCTGGCAGATTACTTGGCCAAGGAACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000056268_MULTIEX1-2/11=1-4
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0345613=uDENN=PU(22.6=93.3)
A:
PF0345613=uDENN=FE(25.8=100)
C2:
PF0214116=DENN=FE(16.5=100)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTGAGGTATTGTGGAAATTCCC
R:
CCTTGGCCAAGTAATCTGCCA
Band lengths:
108-158
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: