BtaEX0001150 @ bosTau6
Exon Skipping
Description
NA
Coordinates
chr16:78541791-78590234:-
Coord C1 exon
chr16:78590189-78590234
Coord A exon
chr16:78555135-78555184
Coord C2 exon
chr16:78541791-78541860
Length
50 bp
Sequences
Splice sites
3' ss Seq
TTTAAAATTTGCATTCACAGGAA
3' ss Score
8.01
5' ss Seq
AAGGTACAG
5' ss Score
8.04
Exon sequences
Seq C1 exon
AGATCCGGAGGTGTTGTGGAAGTTCCCAGAGGACTTTGCAGACCAG
Seq A exon
GAAGTACTACAGACTGTGCCAAAGTTCTGCTTCCCCTTTGACGTTGAAAG
Seq C2 exon
TTACCTGCCATGGTTTGAAGTATATTACAAGCTTCTGAATACTCTGGCAGATTACTTGACTAAGGAACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000037661_MULTIEX1-1/3=C1-3
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF0345613=uDENN=PU(34.0=94.1)
C2:
PF0214116=DENN=FE(12.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGAGGTGTTGTGGAAGTTCC
R:
CAGTTCCTTAGTCAAGTAATCTGCCA
Band lengths:
111-161
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development