GgaEX1019262 @ galGal4
Exon Skipping
Gene
ENSGALG00000002246 | DENND1B
Description
DENN/MADD domain containing 1B [Source:HGNC Symbol;Acc:HGNC:28404]
Coordinates
chr8:2355386-2377730:+
Coord C1 exon
chr8:2355386-2355429
Coord A exon
chr8:2369642-2369691
Coord C2 exon
chr8:2377611-2377730
Length
50 bp
Sequences
Splice sites
3' ss Seq
AGTTTCCCTTGCATTTACAGGAA
3' ss Score
9.48
5' ss Seq
AAGGTATGT
5' ss Score
9.79
Exon sequences
Seq C1 exon
ATCCAGTGGTACTGTGGAAGTTCCCGGAGGACTTTGGAGACCAG
Seq A exon
GAAGTGTTGAACAGCGTTCCAAAGTTCTGCTTTCCTTTTGACATCGAAAG
Seq C2 exon
GGTGTCCCAAAACCAAGTAGGACAGCATTTTACTTTTGTGCTCACCGACATTGAAAGTAAGCAACGGTTTGGATTTTGCCGTTTGACATCAGGAGGCAAAGTCTGCCTCTGTATTCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002246-'2-3,'2-2,3-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF0345613=uDENN=PU(34.0=94.1)
C2:
PF0345613=uDENN=PD(63.8=73.2),PF0214116=DENN=PU(4.0=19.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACTGTGGAAGTTCCCGGAGG
R:
TTGCCTCCTGATGTCAAACGG
Band lengths:
134-184
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]