MmuEX0014227 @ mm9
Exon Skipping
Gene
ENSMUSG00000056268 | Dennd1b
Description
DENN/MADD domain containing 1B [Source:MGI Symbol;Acc:MGI:2447812]
Coordinates
chr1:140862743-140936626:+
Coord C1 exon
chr1:140862743-140862807
Coord A exon
chr1:140919682-140919725
Coord C2 exon
chr1:140936577-140936626
Length
44 bp
Sequences
Splice sites
3' ss Seq
TCTATGTCAATTGTTTGCAGATC
3' ss Score
7.63
5' ss Seq
CAGGTTGGA
5' ss Score
5.59
Exon sequences
Seq C1 exon
GGAAAATCCAGAAAGAACTTTTGACTTGGTATTGAAAGTGAAGTGTCATGCCTCTGAAAATGAAG
Seq A exon
ATCCTGAGGTATTGTGGAAATTCCCAGAGGACTTTGGAGACCAG
Seq C2 exon
GAAGTTCTGCAGAGCGTGCCCAAGTTCTGTTTTCCCTTCGATGTGGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000056268_MULTIEX1-1/11=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.011 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0345613=uDENN=PU(0.1=0.0)
A:
PF0345613=uDENN=PU(22.6=93.3)
C2:
PF0345613=uDENN=FE(25.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TCCAGAAAGAACTTTTGACTTGGT
R:
TTTCCACATCGAAGGGAAAACAGA
Band lengths:
108-152
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: