GgaEX0002794 @ galGal4
Exon Skipping
Gene
ENSGALG00000002246 | DENND1B
Description
DENN/MADD domain containing 1B [Source:HGNC Symbol;Acc:HGNC:28404]
Coordinates
chr8:2324374-2369691:+
Coord C1 exon
chr8:2324374-2324444
Coord A exon
chr8:2355386-2355429
Coord C2 exon
chr8:2369642-2369691
Length
44 bp
Sequences
Splice sites
3' ss Seq
TGTCTGTCAATTATTTACAGATC
3' ss Score
8.4
5' ss Seq
CAGGTTGGA
5' ss Score
5.59
Exon sequences
Seq C1 exon
TTCTAGGGAAAATCCGGAACGTACCTTTGATTTGGTACTGAAGGTGAAATGCCAAGCATCTGAAAATGAAG
Seq A exon
ATCCAGTGGTACTGTGGAAGTTCCCGGAGGACTTTGGAGACCAG
Seq C2 exon
GAAGTGTTGAACAGCGTTCCAAAGTTCTGCTTTCCTTTTGACATCGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002246_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0345613=uDENN=PU(34.0=94.1)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GGAACGTACCTTTGATTTGGTACTG
R:
TCGATGTCAAAAGGAAAGCAGA
Band lengths:
103-147
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]