GgaEX0002794 @ galGal3
Exon Skipping
Gene
ENSGALG00000002246 | DENND1B
Description
NA
Coordinates
chr8:2344861-2390580:+
Coord C1 exon
chr8:2344861-2344931
Coord A exon
chr8:2375873-2375916
Coord C2 exon
chr8:2390531-2390580
Length
44 bp
Sequences
Splice sites
3' ss Seq
TGTCTGTCAATTATTTACAGATC
3' ss Score
8.4
5' ss Seq
CAGGTTGGA
5' ss Score
5.59
Exon sequences
Seq C1 exon
TTCTAGGGAAAATCCGGAACGTACCTTTGATTTGGTACTGAAGGTGAAATGCCAAGCATCTGAAAATGAAG
Seq A exon
ATCCAGTGGTACTGTGGAAGTTCCCGGAGGACTTTGGAGACCAG
Seq C2 exon
GAAGTGTTGAACAGCGTTCCAAAGTTCTGCTTTCCTTTTGACATCGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002246-'0-2,'0-1,1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAACGTACCTTTGATTTGGTACTG
R:
TCGATGTCAAAAGGAAAGCAGA
Band lengths:
103-147
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]