RnoEX0027117 @ rn6
Exon Skipping
Gene
ENSRNOG00000011063 | Dennd1b
Description
DENN domain containing 1B [Source:RGD Symbol;Acc:1308441]
Coordinates
chr13:56018113-56096883:+
Coord C1 exon
chr13:56018113-56018177
Coord A exon
chr13:56077085-56077128
Coord C2 exon
chr13:56096834-56096883
Length
44 bp
Sequences
Splice sites
3' ss Seq
CGTGTGTCACTTGTTTGCAGATC
3' ss Score
9.57
5' ss Seq
CAGGTTGGA
5' ss Score
5.59
Exon sequences
Seq C1 exon
GGAAAATCCAGAAAGAACTTTCGACTTGGTATTAAAAGTGAAGTGTCATGCCTCTGAAAATGAAG
Seq A exon
ATCCTGTGGTATTGTGGAAATTCCCAGAGGACTTTGGAGATCAG
Seq C2 exon
GAAGTTCTGCAGAGTGTGCCCAGGTTCTGTTTTCCCTTCGATGTGGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011063_MULTIEX1-2/10=C1-3
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0345613=uDENN=PU(0.1=0.0)
A:
PF0345613=uDENN=PU(22.6=93.3)
C2:
PF0345613=uDENN=PU(34.0=94.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AGAACTTTCGACTTGGTATTAAAAGT
R:
TTCCACATCGAAGGGAAAACAGA
Band lengths:
100-144
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]