RnoEX0027115 @ rn6
Exon Skipping
Gene
ENSRNOG00000011063 | Dennd1b
Description
DENN domain containing 1B [Source:RGD Symbol;Acc:1308441]
Coordinates
chr13:56018113-56077128:+
Coord C1 exon
chr13:56018113-56018177
Coord A exon
chr13:56027934-56027983
Coord C2 exon
chr13:56077085-56077128
Length
50 bp
Sequences
Splice sites
3' ss Seq
TCCTGAGTGTTGTCCACTAGATT
3' ss Score
4.87
5' ss Seq
AAGGTAGGT
5' ss Score
10.29
Exon sequences
Seq C1 exon
GGAAAATCCAGAAAGAACTTTCGACTTGGTATTAAAAGTGAAGTGTCATGCCTCTGAAAATGAAG
Seq A exon
ATTCTCAGCTGTTGACGTCAAGTGCCTGTCTCACTTGGGACCTCCGGAAG
Seq C2 exon
ATCCTGTGGTATTGTGGAAATTCCCAGAGGACTTTGGAGATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011063_MULTIEX1-1/10=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0345613=uDENN=PU(0.1=0.0)
A:
NO
C2:
PF0345613=uDENN=PU(22.6=93.3)
Main Inclusion Isoform:
ENSRNOT00000043907fB4031
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTTCGACTTGGTATTAAAAGTGAA
R:
TGATCTCCAAAGTCCTCTGGGA
Band lengths:
92-142
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]