BtaEX6038709 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000031809 | DENND1C
Description
DENN/MADD domain containing 1C [Source:HGNC Symbol;Acc:HGNC:26225]
Coordinates
chr7:19221492-19221884:+
Coord C1 exon
chr7:19221492-19221556
Coord A exon
chr7:19221639-19221682
Coord C2 exon
chr7:19221835-19221884
Length
44 bp
Sequences
Splice sites
3' ss Seq
GTGGCTCATTTTCCGTGCAGATC
3' ss Score
8.53
5' ss Seq
CAGGTATGC
5' ss Score
9.37
Exon sequences
Seq C1 exon
AGGGGGTCCCCCTGCCCTGTTTGATTGGTTCTTCGAAGCAGCCTACCCTGCCTCCCTGCAGGAAG
Seq A exon
ATCCCCCCATCCTGCGGCAGTTCCCCCCAGACTTCCAGGACCAG
Seq C2 exon
GAGTCTATGCAGATGGTGCCTAAATTCTGCTTCCCTTTTGATGTGGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000031809-'2-2,'2-1,3-2=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.067 C2=0.000
Domain overlap (PFAM):
C1:
PF0345613=uDENN=PU(0.1=0.0)
A:
PF0345613=uDENN=PU(23.0=93.3)
C2:
PF0345613=uDENN=FE(26.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCCCCTGCCCTGTTTGATT
R:
TTCCACATCAAAAGGGAAGCAGA
Band lengths:
108-152
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]