RnoEX0027139 @ rn6
Exon Skipping
Gene
ENSRNOG00000046050 | Dennd1c
Description
DENN/MADD domain containing 1C [Source:MGI Symbol;Acc:MGI:1918035]
Coordinates
chr9:9971570-9973237:+
Coord C1 exon
chr9:9971570-9971634
Coord A exon
chr9:9971726-9971769
Coord C2 exon
chr9:9973118-9973237
Length
44 bp
Sequences
Splice sites
3' ss Seq
GCAGCTGGCCCTTCCTGCAGATC
3' ss Score
8.34
5' ss Seq
CAGGTATTC
5' ss Score
6.49
Exon sequences
Seq C1 exon
AAGGCATCCCTCTGCTGTGTTTGACTGGTTCTTCGAAGCTGGCCGCCCCAACTCCCTGGAGGAGG
Seq A exon
ATCCCCTGATCCTGCGGAAGTTCCCTCCAGACTTCCAGGAACAG
Seq C2 exon
GGAGCCGCCCAGCCCTGCTGTCCAGCACTTTACCTTTGCCCTCACTGACCTGGTGGGCAACCGTAGATTTGGCTTCTGCCGCCTGCGAGCCGGTGCATGGAGCTGCCTCTGTATACTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000046050_MULTIEX1-1/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0345613=uDENN=PU(0.1=0.0)
A:
PF0345613=uDENN=PU(23.0=93.3)
C2:
PF0345613=uDENN=PD(47.5=70.7),PF0214116=DENN=PU(3.9=19.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATCCCTCTGCTGTGTTTGA
R:
AAGCCAAATCTACGGTTGCCC
Band lengths:
137-181
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]