HsaEX6092270 @ hg19
Exon Skipping
Gene
ENSG00000205744 | DENND1C
Description
DENN/MADD domain containing 1C [Source:HGNC Symbol;Acc:26225]
Coordinates
chr19:6479680-6480062:-
Coord C1 exon
chr19:6479998-6480062
Coord A exon
chr19:6479870-6479913
Coord C2 exon
chr19:6479680-6479729
Length
44 bp
Sequences
Splice sites
3' ss Seq
AGGCGTGCTCTCTTCTACAGATC
3' ss Score
9.9
5' ss Seq
CAGGTATTC
5' ss Score
6.49
Exon sequences
Seq C1 exon
AGGGGGCTCCCCTGCTGTGTTTGATTGGTTCTTCGAAGCGGCCTGCCCTGCCTCCCTGCAGGAGG
Seq A exon
ATCCCCCCATCCTGCGGCAGTTCCCTCCAGACTTCAGGGACCAG
Seq C2 exon
GAAGCTATGCAGATGGTGCCTAAATTCTGCTTCCCTTTTGATGTGGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000205744-'1-2,'1-1,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.067 C2=0.000
Domain overlap (PFAM):
C1:
PF0345613=uDENN=PU(0.1=0.0)
A:
PF0345613=uDENN=PU(23.0=93.3)
C2:
PF0345613=uDENN=PU(31.8=93.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCCCCTGCTGTGTTTGATT
R:
TTCCACATCAAAAGGGAAGCAGA
Band lengths:
108-152
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)