DreEX6034110 @ danRer10
Exon Skipping
Gene
ENSDARG00000078503 | DENND1C
Description
DENN/MADD domain containing 1C [Source:HGNC Symbol;Acc:HGNC:26225]
Coordinates
chr1:55537123-55541004:-
Coord C1 exon
chr1:55540940-55541004
Coord A exon
chr1:55538331-55538374
Coord C2 exon
chr1:55537123-55537172
Length
44 bp
Sequences
Splice sites
3' ss Seq
TTTTCTGTCTATTTGAGTAGATC
3' ss Score
5.52
5' ss Seq
GAGGTTAGT
5' ss Score
7.15
Exon sequences
Seq C1 exon
GAAAAACCCTGACAAAACGTTCTACTGGTTCTTTCAAGCCTCGTGTCCAATCGCCAGAGATAAAG
Seq A exon
ATCCTGATGTGCTGTTTCAGTTCCCTGAAGACTTTAATGATGAG
Seq C2 exon
GAGTCTCGGAAGTCGTTGCCTCGCTTCTGCTTCCCTTATGACATAGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000078503-'1-5,'1-3,4-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0345613=uDENN=PU(1.6=4.3)
A:
PF0345613=uDENN=PU(22.6=93.3)
C2:
PF0345613=uDENN=FE(25.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCCTGACAAAACGTTCTACTGG
R:
CTCTATGTCATAAGGGAAGCAGAAGC
Band lengths:
108-152
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]