MmuEX6078695 @ mm10
Exon Skipping
Gene
ENSMUSG00000002668 | Dennd1c
Description
DENN/MADD domain containing 1C [Source:MGI Symbol;Acc:MGI:1918035]
Coordinates
chr17:57076647-57077005:-
Coord C1 exon
chr17:57076941-57077005
Coord A exon
chr17:57076818-57076861
Coord C2 exon
chr17:57076647-57076696
Length
44 bp
Sequences
Splice sites
3' ss Seq
GCAGCTGGCCCTCCCTACAGATC
3' ss Score
8.52
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
Exon sequences
Seq C1 exon
AAGGCATCCCCCTGCCATGTTTGACTGGTTCTTTGAAGCTGGCTGCCCCAACTCCCTGGAAGAGG
Seq A exon
ATCCCCCCATCCTGCGGCAGTTCCCTCCAGACTTCCAGGAGCAG
Seq C2 exon
GAAGCCATGCAGATGGTGCCCAGGTTCTGTTTCCCCTTCGACATAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000002668-'2-6,'2-5,4-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.333 C2=0.000
Domain overlap (PFAM):
C1:
PF0345613=uDENN=PU(0.1=0.0)
A:
PF0345613=uDENN=PU(23.0=93.3)
C2:
PF0345613=uDENN=FE(26.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCCCCCTGCCATGTTTGAC
R:
TCTATGTCGAAGGGGAAACAGA
Band lengths:
108-152
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types