GgaEX0001242 @ galGal4
Exon Skipping
Gene
ENSGALG00000001157 | DENND1A
Description
DENN/MADD domain containing 1A [Source:HGNC Symbol;Acc:HGNC:29324]
Coordinates
chr17:9152830-9193806:-
Coord C1 exon
chr17:9193773-9193806
Coord A exon
chr17:9169571-9169614
Coord C2 exon
chr17:9152830-9152879
Length
44 bp
Sequences
Splice sites
3' ss Seq
TATCTGTCAATTATTTACAGATC
3' ss Score
7.84
5' ss Seq
CAGGTTTGG
5' ss Score
5.63
Exon sequences
Seq C1 exon
GTAACTTATTCGGGCATCAGTTGCATTGGGAAAG
Seq A exon
ATCCTGAGGTGCGGAGGCAATTCCCAGAGGACTACAGTGACCAG
Seq C2 exon
GAAGTTCTACAGACTTTGACCAAGTTTTGTTTCCCCTTTTACGTGGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001157-'0-12,'0-6,5-12
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0345613=uDENN=PU(34.8=94.1)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GTAACTTATTCGGGCATCAGTTG
R:
CTGTCCACGTAAAAGGGGAAACA
Band lengths:
84-128
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]