RnoEX0027095 @ rn6
Exon Skipping
Gene
ENSRNOG00000010526 | Dennd1a
Description
DENN domain containing 1A [Source:RGD Symbol;Acc:1307927]
Coordinates
chr3:22390099-22500765:-
Coord C1 exon
chr3:22500675-22500765
Coord A exon
chr3:22413245-22413288
Coord C2 exon
chr3:22390099-22390148
Length
44 bp
Sequences
Splice sites
3' ss Seq
TATCTGTCAATTATTTACAGATC
3' ss Score
7.84
5' ss Seq
CAGGTTTGG
5' ss Score
5.63
Exon sequences
Seq C1 exon
ATGATTTGTTTCCTTTGTAGACAAAACCCGGAGACTACATTTGAAGTGTATGTGGAAGTGGCCTATCCTAGGACAGGTGGCACGCTTTCAG
Seq A exon
ATCCTGAGGTGCAGAGGCAATTCCCGGAGGACTACAGTGACCAG
Seq C2 exon
GAAGTTCTACAGACTTTGACCAAGTTTTGTTTTCCCTTCTATGTGGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010526_MULTIEX1-1/6=C1-4
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.013 C2=0.000
Domain overlap (PFAM):
C1:
PF0345613=uDENN=PU(0.1=0.0)
A:
PF0345613=uDENN=PU(23.0=93.3)
C2:
PF0345613=uDENN=FE(26.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TTCCTTTGTAGACAAAACCCGGA
R:
CTGTCCACATAGAAGGGAAAACA
Band lengths:
132-176
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]