HsaEX0019091 @ hg38
Exon Skipping
Gene
ENSG00000119522 | DENND1A
Description
DENN domain containing 1A [Source:HGNC Symbol;Acc:HGNC:29324]
Coordinates
chr9:123769514-123879021:-
Coord C1 exon
chr9:123878951-123879021
Coord A exon
chr9:123792587-123792630
Coord C2 exon
chr9:123769514-123769563
Length
44 bp
Sequences
Splice sites
3' ss Seq
TATCTGTCAATTATTTACAGATC
3' ss Score
7.84
5' ss Seq
CAGGTTCGG
5' ss Score
6.2
Exon sequences
Seq C1 exon
GCAGAATCCAGAGACCACATTTGAAGTATATGTTGAAGTGGCCTATCCCAGGACAGGTGGCACTCTTTCAG
Seq A exon
ATCCTGAGGTGCAGAGGCAATTCCCGGAGGACTACAGTGACCAG
Seq C2 exon
GAAGTTCTACAGACTTTGACCAAGTTTTGTTTCCCCTTCTATGTGGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000119522_MULTIEX3-3/11=2-4
Average complexity
S
Mappability confidence:
90%=100=90%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.012 A=0.121 C2=0.000
Domain overlap (PFAM):
C1:
PF0345613=uDENN=PU(0.1=0.0)
A:
PF0345613=uDENN=PU(21.1=53.3)
C2:
PF0345613=uDENN=FE(26.2=100)
Main Skipping Isoform:
ENST00000373624fB13615
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGAATCCAGAGACCACATT
R:
TGTCCACATAGAAGGGGAAACA
Band lengths:
120-164
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development