BtaEX0011023 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000003610 | DENND1A
Description
DENN/MADD domain containing 1A [Source:HGNC Symbol;Acc:HGNC:29324]
Coordinates
chr11:94886651-95009999:-
Coord C1 exon
chr11:95009929-95009999
Coord A exon
chr11:94911066-94911109
Coord C2 exon
chr11:94886651-94886700
Length
44 bp
Sequences
Splice sites
3' ss Seq
TATCTGTCAATTATTTACAGATC
3' ss Score
7.84
5' ss Seq
CAGGTTCGG
5' ss Score
6.2
Exon sequences
Seq C1 exon
GCAAAACCCAGAGACCACCTTTGAAGTGTATGTTGAAGTGGCCTGTCCTAGGACAGGTGGCACTCTTTCAG
Seq A exon
ATCCTGAGGTGCAGAGGCAATTCCCGGAGGACTACAGTGACCAG
Seq C2 exon
GAAGTTCTACAGACTCTGACCAAGTTTTGTTTCCCCTTCTATGTGGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003610-'6-11,'6-8,9-11
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0345613=uDENN=PU(0.1=0.0)
A:
PF0345613=uDENN=PU(23.0=93.3)
C2:
PF0345613=uDENN=FE(26.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GCAAAACCCAGAGACCACCTT
R:
TGTCCACATAGAAGGGGAAACA
Band lengths:
120-164
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development